Tutorial¶
Upon installation TRuML can be used from the command line by invoking the truml
command with
various options. All options can be seen with the command:
truml -h
Converting from Kappa to BNGL¶
In order to convert a model written in Kappa syntax to BNGL syntax, run the following command:
truml -k model.ka
where model.ka
is the Kappa model of interest.
Converting from BNGL to Kappa¶
Converting from BNGL to Kappa is similarly straightforward:
truml -b model.bngl
Verbose conversion¶
The default settings are to output warnings to the terminal. To enable a slightly more verbose output, describing the
various steps in translation, the -v
flag is available. Output useful for debugging is available by using the -d
flag. This output can be redirected to a file by specifying a file name after the -l
flag.